J3_4ZSN_013

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4ZSN|1|QA|U|1240, 4ZSN|1|QA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZSN_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1303

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4ZSN|1|QA|C|1237
4ZSN|1|QA|A|1238
4ZSN|1|QA|A|1239
4ZSN|1|QA|U|1240
4ZSN|1|QA|G|1241
*
4ZSN|1|QA|C|1296
4ZSN|1|QA|C|1297
4ZSN|1|QA|C|1298
4ZSN|1|QA|A|1299
4ZSN|1|QA|G|1300
4ZSN|1|QA|U|1301
4ZSN|1|QA|U|1302
4ZSN|1|QA|C|1303
*
4ZSN|1|QA|G|1334
4ZSN|1|QA|C|1335
4ZSN|1|QA|C|1336
4ZSN|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx