J3_4ZSN_019

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

4ZSN|1|RA|A|1084

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZSN_019 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.353

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

4ZSN|1|RA|G|1055
4ZSN|1|RA|G|1056
4ZSN|1|RA|A|1057
*
4ZSN|1|RA|U|1081
4ZSN|1|RA|U|1082
4ZSN|1|RA|U|1083
4ZSN|1|RA|A|1084
4ZSN|1|RA|A|1085
4ZSN|1|RA|A|1086
4ZSN|1|RA|G|1087
*
4ZSN|1|RA|C|1102
4ZSN|1|RA|A|1103
4ZSN|1|RA|C|1104

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36