J3_4ZSN_078

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4ZSN|1|QA|U|1212, 4ZSN|1|QA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZSN_078 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.139

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4ZSN|1|QA|C|990
4ZSN|1|QA|U|991
4ZSN|1|QA|U|992
4ZSN|1|QA|G|993
4ZSN|1|QA|A|994
4ZSN|1|QA|C|995
4ZSN|1|QA|A|996
4ZSN|1|QA|U|997
*
4ZSN|1|QA|A|1044
4ZSN|1|QA|C|1045
4ZSN|1|QA|A|1046
4ZSN|1|QA|G|1047
*
4ZSN|1|QA|C|1210
4ZSN|1|QA|U|1211
4ZSN|1|QA|U|1212
4ZSN|1|QA|A|1213
4ZSN|1|QA|C|1214
4ZSN|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain QY

Killer protein

Chain YA

Large subunit ribosomal RNA; LSU rRNA