J3_5A2Q_001

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5A2Q_001 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2153

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5A2Q|1|2|A|816
5A2Q|1|2|G|817
5A2Q|1|2|A|818
5A2Q|1|2|G|819
*
5A2Q|1|2|C|829
5A2Q|1|2|A|830
5A2Q|1|2|G|831
*
5A2Q|1|2|C|843
5A2Q|1|2|U|844
5A2Q|1|2|G|845
5A2Q|1|2|G|846
5A2Q|1|2|A|847
5A2Q|1|2|U|848

Current chains

Chain 2

18S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN ES4

Chain J

RIBOSOMAL PROTEIN US4

Chain Y

RIBOSOMAL PROTEIN ES24