J3_5A2Q_007

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

5A2Q|1|2|G|1274, 5A2Q|1|2|G|1507, 5A2Q|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5A2Q_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.2425

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5A2Q|1|2|C|1272
5A2Q|1|2|C|1273
5A2Q|1|2|G|1274
5A2Q|1|2|G|1275
5A2Q|1|2|A|1276
5A2Q|1|2|C|1277
*
5A2Q|1|2|G|1320
5A2Q|1|2|G|1321
5A2Q|1|2|G|1322
5A2Q|1|2|U|1323
5A2Q|1|2|G|1324
*
5A2Q|1|2|U|1504
5A2Q|1|2|U|1505
5A2Q|1|2|A|1506
5A2Q|1|2|G|1507
5A2Q|1|2|A|1508
5A2Q|1|2|U|1509
5A2Q|1|2|G|1510

Current chains

Chain 2

18S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN ES10

Chain d

RIBOSOMAL PROTEIN US14

Chain f

RIBOSOMAL PROTEIN ES31