J3_5A9Z_017

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5A9Z|1|BA|U|1240||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5A9Z_017 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.3209

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5A9Z|1|BA|C|1237||||P_1
5A9Z|1|BA|A|1238||||P_1
5A9Z|1|BA|A|1239||||P_1
5A9Z|1|BA|U|1240||||P_1
5A9Z|1|BA|G|1241||||P_1
*
5A9Z|1|BA|C|1296||||P_1
5A9Z|1|BA|C|1297||||P_1
5A9Z|1|BA|C|1298||||P_1
5A9Z|1|BA|A|1299||||P_1
5A9Z|1|BA|G|1300||||P_1
5A9Z|1|BA|U|1301||||P_1
5A9Z|1|BA|U|1302||||P_1
5A9Z|1|BA|C|1303||||P_1
*
5A9Z|1|BA|G|1334||||P_1
5A9Z|1|BA|C|1335||||P_1
5A9Z|1|BA|C|1336||||P_1
5A9Z|1|BA|G|1337||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BK

30S ribosomal protein S7

Chain BQ

30S ribosomal protein S13

Chain BY

30S ribosomal protein Thx