J3_5AA0_010
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5AA0|1|BA|U|871||||P_1, 5AA0|1|BA|A|873||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AA0_010 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.2189
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5AA0|1|BA|C|826||||P_1
5AA0|1|BA|U|827||||P_1
5AA0|1|BA|A|828||||P_1
5AA0|1|BA|G|829||||P_1
*
5AA0|1|BA|C|857||||P_1
5AA0|1|BA|G|858||||P_1
5AA0|1|BA|A|859||||P_1
5AA0|1|BA|A|860||||P_1
5AA0|1|BA|G|861||||P_1
*
5AA0|1|BA|C|868||||P_1
5AA0|1|BA|G|869||||P_1
5AA0|1|BA|U|870||||P_1
5AA0|1|BA|U|871||||P_1
5AA0|1|BA|A|872||||P_1
5AA0|1|BA|A|873||||P_1
5AA0|1|BA|G|874||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BF
- 30S ribosomal protein S2
- Chain BL
- 30S ribosomal protein S8
Coloring options: