J3_5AA0_024
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5AA0|1|AA|G|2833||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AA0_024 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.2555
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AA0|1|AA|C|2814||||P_1
5AA0|1|AA|C|2815||||P_1
*
5AA0|1|AA|G|2831||||P_1
5AA0|1|AA|U|2832||||P_1
5AA0|1|AA|G|2833||||P_1
5AA0|1|AA|G|2834||||P_1
5AA0|1|AA|A|2835||||P_1
5AA0|1|AA|U|2836||||P_1
*
5AA0|1|AA|A|2882||||P_1
5AA0|1|AA|A|2883||||P_1
5AA0|1|AA|U|2884||||P_1
5AA0|1|AA|C|2885||||P_1
5AA0|1|AA|G|2886||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L3
- Chain AO
- 50S ribosomal protein L17
- Chain Ab
- 50S ribosomal protein L32
Coloring options: