J3_5AA0_030

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UG*CGCCGAUGG*CAG

Length

14 nucleotides

Bulged bases

5AA0|1|BA|U|723||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AA0_030 not in the Motif Atlas

Homologous match to J3_4LFB_012

Geometric discrepancy: 0.2715

The information below is about J3_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.4

Basepair signature

cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5AA0|1|BA|U|672||||P_1
5AA0|1|BA|G|673||||P_1
*
5AA0|1|BA|C|717||||P_1
5AA0|1|BA|G|718||||P_1
5AA0|1|BA|C|719||||P_1
5AA0|1|BA|C|720||||P_1
5AA0|1|BA|G|721||||P_1
5AA0|1|BA|A|722||||P_1
5AA0|1|BA|U|723||||P_1
5AA0|1|BA|G|724||||P_1
5AA0|1|BA|G|725||||P_1
*
5AA0|1|BA|C|732||||P_1
5AA0|1|BA|A|733||||P_1
5AA0|1|BA|G|734||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BJ

30S ribosomal protein S6

Chain BO

30S ribosomal protein S11

Chain BS

30S ribosomal protein S15

Chain BV

30S ribosomal protein S18