J3_5ADY_020

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

5ADY|1|B|A|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ADY_020 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.2214

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5ADY|1|B|C|1298
5ADY|1|B|G|1299
5ADY|1|B|G|1300
5ADY|1|B|A|1301
5ADY|1|B|A|1302
5ADY|1|B|G|1303
*
5ADY|1|B|C|1625
5ADY|1|B|A|1626
5ADY|1|B|G|1627
*
5ADY|1|B|C|1639
5ADY|1|B|A|1640
5ADY|1|B|A|1641
5ADY|1|B|G|1642

Current chains

Chain B

23S RRNA

Nearby chains