J3_5AFI_011
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 5AFI|1|B|U|14||||P_1, 5AFI|1|B|A|108||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_011 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.3615
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|B|G|10||||P_1
5AFI|1|B|C|11||||P_1
5AFI|1|B|C|12||||P_1
5AFI|1|B|G|13||||P_1
5AFI|1|B|U|14||||P_1
5AFI|1|B|A|15||||P_1
5AFI|1|B|G|16||||P_1
*
5AFI|1|B|C|68||||P_1
5AFI|1|B|G|69||||P_1
5AFI|1|B|C|70||||P_1
*
5AFI|1|B|G|106||||P_1
5AFI|1|B|G|107||||P_1
5AFI|1|B|A|108||||P_1
5AFI|1|B|A|109||||P_1
5AFI|1|B|C|110||||P_1
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
Coloring options: