J3_5AFI_019
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 5AFI|1|a|U|1240||||P_1, 5AFI|1|a|C|1302||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_019 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1598
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AFI|1|a|C|1237||||P_1
5AFI|1|a|A|1238||||P_1
5AFI|1|a|A|1239||||P_1
5AFI|1|a|U|1240||||P_1
5AFI|1|a|G|1241||||P_1
*
5AFI|1|a|C|1296||||P_1
5AFI|1|a|G|1297||||P_1
5AFI|1|a|U|1298||||P_1
5AFI|1|a|A|1299||||P_1
5AFI|1|a|G|1300||||P_1
5AFI|1|a|U|1301||||P_1
5AFI|1|a|C|1302||||P_1
5AFI|1|a|C|1303||||P_1
*
5AFI|1|a|G|1334||||P_1
5AFI|1|a|U|1335||||P_1
5AFI|1|a|C|1336||||P_1
5AFI|1|a|G|1337||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
- Chain w
- Transfer RNA; tRNA
Coloring options: