J3_5AFI_030
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5AFI|1|a|C|48||||P_1, 5AFI|1|a|A|51||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_030 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.095
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AFI|1|a|G|46||||P_1
5AFI|1|a|C|47||||P_1
5AFI|1|a|C|48||||P_1
5AFI|1|a|U|49||||P_1
5AFI|1|a|A|50||||P_1
5AFI|1|a|A|51||||P_1
5AFI|1|a|C|52||||P_1
*
5AFI|1|a|G|359||||P_1
5AFI|1|a|G|360||||P_1
5AFI|1|a|G|361||||P_1
5AFI|1|a|G|362||||P_1
5AFI|1|a|A|363||||P_1
5AFI|1|a|A|364||||P_1
5AFI|1|a|U|365||||P_1
5AFI|1|a|A|366||||P_1
5AFI|1|a|U|367||||P_1
*
5AFI|1|a|A|393||||P_1
5AFI|1|a|G|394||||P_1
5AFI|1|a|C|395||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
- Chain y
- Transfer RNA; tRNA
- Chain z
- Elongation factor Tu 2
Coloring options: