J3_5AJ0_009

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ0_009 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1806

The information below is about J3_5J7L_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5AJ0|1|A2|C|3908
5AJ0|1|A2|G|3909
5AJ0|1|A2|G|3910
*
5AJ0|1|A2|C|4044
5AJ0|1|A2|U|4045
5AJ0|1|A2|G|4046
5AJ0|1|A2|A|4047
5AJ0|1|A2|C|4048
*
5AJ0|1|A2|G|4130
5AJ0|1|A2|G|4131
5AJ0|1|A2|A|4132
5AJ0|1|A2|C|4133
5AJ0|1|A2|A|4134
5AJ0|1|A2|G|4135

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AG

60S ribosomal protein L7a

Chain AN

60S ribosomal protein L15