J3_5AJ0_027
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 5AJ0|1|A2|U|348, 5AJ0|1|A2|A|356, 5AJ0|1|A3|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_027 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0911
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5AJ0|1|A2|C|345
5AJ0|1|A2|G|346
5AJ0|1|A2|A|347
5AJ0|1|A2|U|348
5AJ0|1|A2|A|349
5AJ0|1|A2|G|350
5AJ0|1|A2|U|351
5AJ0|1|A2|C|352
5AJ0|1|A2|A|353
5AJ0|1|A2|A|354
5AJ0|1|A2|C|355
5AJ0|1|A2|A|356
5AJ0|1|A2|A|357
5AJ0|1|A2|G|358
5AJ0|1|A2|U|359
5AJ0|1|A2|A|360
5AJ0|1|A2|C|361
*
5AJ0|1|A2|G|368
5AJ0|1|A2|G|369
5AJ0|1|A2|A|370
5AJ0|1|A2|A|371
5AJ0|1|A2|A|372
5AJ0|1|A2|G|373
*
5AJ0|1|A3|C|21
5AJ0|1|A3|U|22
5AJ0|1|A3|C|23
5AJ0|1|A3|G|24
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4
- Chain AY
- 60S ribosomal protein L26
- Chain Aj
- 60S ribosomal protein L37
- Chain Al
- 60S ribosomal protein L39
- Chain By
- Nascent protein chain
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