3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
Length
28 nucleotides
Bulged bases
5AJ0|1|A2|G|403, 5AJ0|1|A2|G|407
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5AJ0_028 not in the Motif Atlas
Homologous match to J3_8P9A_047
Geometric discrepancy: 0.362
The information below is about J3_8P9A_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5AJ0|1|A2|U|374
5AJ0|1|A2|U|375
5AJ0|1|A2|G|376
5AJ0|1|A2|A|377
5AJ0|1|A2|A|378
5AJ0|1|A2|A|379
5AJ0|1|A2|A|380
5AJ0|1|A2|G|381
5AJ0|1|A2|A|382
5AJ0|1|A2|A|383
5AJ0|1|A2|C|384
*
5AJ0|1|A2|G|395
5AJ0|1|A2|A|396
5AJ0|1|A2|G|397
5AJ0|1|A2|U|398
5AJ0|1|A2|U|399
5AJ0|1|A2|C|400
5AJ0|1|A2|A|401
5AJ0|1|A2|A|402
5AJ0|1|A2|G|403
5AJ0|1|A2|A|404
5AJ0|1|A2|G|405
5AJ0|1|A2|G|406
5AJ0|1|A2|G|407
5AJ0|1|A2|C|408
5AJ0|1|A2|G|409
*
5AJ0|1|A3|C|19
5AJ0|1|A3|A|20

Current chains

Chain A2
28S ribosomal RNA
Chain A3
5.8S ribosomal RNA

Nearby chains

Chain AC
60S ribosomal protein L4
Chain AP
60S ribosomal protein L17
Chain AY
60S ribosomal protein L26
Chain Al
60S ribosomal protein L39
Chain By
Nascent protein chain

Coloring options:


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