J3_5AJ0_028
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 5AJ0|1|A2|G|403, 5AJ0|1|A2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_028 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.362
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5AJ0|1|A2|U|374
5AJ0|1|A2|U|375
5AJ0|1|A2|G|376
5AJ0|1|A2|A|377
5AJ0|1|A2|A|378
5AJ0|1|A2|A|379
5AJ0|1|A2|A|380
5AJ0|1|A2|G|381
5AJ0|1|A2|A|382
5AJ0|1|A2|A|383
5AJ0|1|A2|C|384
*
5AJ0|1|A2|G|395
5AJ0|1|A2|A|396
5AJ0|1|A2|G|397
5AJ0|1|A2|U|398
5AJ0|1|A2|U|399
5AJ0|1|A2|C|400
5AJ0|1|A2|A|401
5AJ0|1|A2|A|402
5AJ0|1|A2|G|403
5AJ0|1|A2|A|404
5AJ0|1|A2|G|405
5AJ0|1|A2|G|406
5AJ0|1|A2|G|407
5AJ0|1|A2|C|408
5AJ0|1|A2|G|409
*
5AJ0|1|A3|C|19
5AJ0|1|A3|A|20
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4
- Chain AP
- 60S ribosomal protein L17
- Chain AY
- 60S ribosomal protein L26
- Chain Al
- 60S ribosomal protein L39
- Chain By
- Nascent protein chain
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