J3_5AJ0_032
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_032 not in the Motif Atlas
- Homologous match to J3_8C3A_052
- Geometric discrepancy: 0.1536
- The information below is about J3_8C3A_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5AJ0|1|A2|U|2419
5AJ0|1|A2|C|2420
5AJ0|1|A2|G|2421
5AJ0|1|A2|G|2422
5AJ0|1|A2|U|2423
5AJ0|1|A2|C|2424
*
5AJ0|1|A2|G|2494
5AJ0|1|A2|G|2495
5AJ0|1|A2|A|2496
5AJ0|1|A2|G|2497
5AJ0|1|A2|U|2498
*
5AJ0|1|A2|A|2515
5AJ0|1|A2|A|2516
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AX
- 60S ribosomal protein L23a
- Chain Ag
- 60S ribosomal protein L34
- Chain Ak
- 60S ribosomal protein L38
- Chain Al
- 60S ribosomal protein L39
Coloring options: