J3_5AJ0_035
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_035 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1449
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5AJ0|1|A2|A|2577
5AJ0|1|A2|G|2578
5AJ0|1|A2|A|2579
5AJ0|1|A2|A|2580
5AJ0|1|A2|G|2581
*
5AJ0|1|A2|C|2716
5AJ0|1|A2|C|2717
*
5AJ0|1|A2|G|2721
5AJ0|1|A2|A|2722
5AJ0|1|A2|A|2723
5AJ0|1|A2|A|2724
5AJ0|1|A2|A|2725
5AJ0|1|A2|U|2726
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8
- Chain Ag
- 60S ribosomal protein L34
- Chain Ap
- 60S ribosomal protein L37a
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