3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GUC*GCCUCACGAUCC*GGUGUC
Length
21 nucleotides
Bulged bases
5AJ0|1|A2|U|4336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5AJ0_036 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.1105
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

5AJ0|1|A2|G|4190
5AJ0|1|A2|U|4191
5AJ0|1|A2|C|4192
*
5AJ0|1|A2|G|4293
5AJ0|1|A2|C|4294
5AJ0|1|A2|C|4295
5AJ0|1|A2|U|4296
5AJ0|1|A2|C|4297
5AJ0|1|A2|A|4298
5AJ0|1|A2|C|4299
5AJ0|1|A2|G|4300
5AJ0|1|A2|A|4301
5AJ0|1|A2|U|4302
5AJ0|1|A2|C|4303
5AJ0|1|A2|C|4304
*
5AJ0|1|A2|G|4332
5AJ0|1|A2|G|4333
5AJ0|1|A2|U|4334
5AJ0|1|A2|G|4335
5AJ0|1|A2|U|4336
5AJ0|1|A2|C|4337

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AQ
60S ribosomal protein L18
Chain AT
60S ribosomal protein L21
Chain Aa
60S ribosomal protein L27a
Chain Ao
60S ribosomal protein L36a
Chain Bw
Transfer RNA; tRNA

Coloring options:


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