J3_5AJ0_041

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ0_041 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1372

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5AJ0|1|B1|U|1350
5AJ0|1|B1|G|1351
*
5AJ0|1|B1|U|1360
5AJ0|1|B1|G|1361
5AJ0|1|B1|U|1362
5AJ0|1|B1|C|1363
*
5AJ0|1|B1|G|1375
5AJ0|1|B1|A|1376
5AJ0|1|B1|U|1377
5AJ0|1|B1|A|1378
5AJ0|1|B1|A|1379

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein SA

Chain BC

40S ribosomal protein S2

Chain BR

40S ribosomal protein S17-like