3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5AJ0_041 not in the Motif Atlas
Homologous match to J3_8C3A_085
Geometric discrepancy: 0.1372
The information below is about J3_8C3A_085
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.2
Basepair signature
cWW-F-F-F-F-tSS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

5AJ0|1|B1|U|1350
5AJ0|1|B1|G|1351
*
5AJ0|1|B1|U|1360
5AJ0|1|B1|G|1361
5AJ0|1|B1|U|1362
5AJ0|1|B1|C|1363
*
5AJ0|1|B1|G|1375
5AJ0|1|B1|A|1376
5AJ0|1|B1|U|1377
5AJ0|1|B1|A|1378
5AJ0|1|B1|A|1379

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BA
40S ribosomal protein SA
Chain BC
40S ribosomal protein S2
Chain BR
40S ribosomal protein S17-like

Coloring options:


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