J3_5AJ3_003

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ3_003 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.125

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5AJ3|1|A|A|549
5AJ3|1|A|G|550
5AJ3|1|A|G|551
5AJ3|1|A|A|552
*
5AJ3|1|A|U|719
5AJ3|1|A|A|720
5AJ3|1|A|C|721
*
5AJ3|1|A|G|781
5AJ3|1|A|G|782
5AJ3|1|A|A|783
5AJ3|1|A|U|784

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain I

MITORIBOSOMAL PROTEIN US9M, MRPS9

Chain V

P-SITE AND A-SITE TRNA