J3_5AJ4_003

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ4_003 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1454

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

5AJ4|1|AA|A|549
5AJ4|1|AA|G|550
5AJ4|1|AA|G|551
5AJ4|1|AA|A|552
*
5AJ4|1|AA|U|719
5AJ4|1|AA|A|720
5AJ4|1|AA|C|721
*
5AJ4|1|AA|G|781
5AJ4|1|AA|G|782
5AJ4|1|AA|A|783
5AJ4|1|AA|U|784

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AI

MITORIBOSOMAL PROTEIN US9M, MRPS9

Chain AV

P-SITE AND A-SITE TRNA