J3_5AJ4_008

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5AJ4|1|BA|G|253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ4_008 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.1282

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

5AJ4|1|BA|C|250
5AJ4|1|BA|G|251
5AJ4|1|BA|A|252
5AJ4|1|BA|G|253
5AJ4|1|BA|C|254
5AJ4|1|BA|U|255
5AJ4|1|BA|A|256
*
5AJ4|1|BA|U|319
5AJ4|1|BA|A|320
5AJ4|1|BA|G|321
*
5AJ4|1|BA|C|337
5AJ4|1|BA|G|338
5AJ4|1|BA|A|339
5AJ4|1|BA|G|340

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B7

MITORIBOSOMAL PROTEIN BL34M, MRPL34

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2

Chain Be

MITORIBOSOMAL PROTEIN ML41, MRPL41