J3_5AKA_004

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AKA_004 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1772

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|G|1055
5AKA|1|B|G|1056
5AKA|1|B|A|1057
*
5AKA|1|B|U|1081
5AKA|1|B|U|1082
5AKA|1|B|U|1083
5AKA|1|B|A|1084
5AKA|1|B|A|1085
5AKA|1|B|A|1086
5AKA|1|B|G|1087
*
5AKA|1|B|C|1102
5AKA|1|B|A|1103
5AKA|1|B|C|1104

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11