J3_5AKA_007

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AKA_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0737

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5AKA|1|B|C|2091
5AKA|1|B|U|2092
5AKA|1|B|G|2093
*
5AKA|1|B|C|2196
5AKA|1|B|U|2197
5AKA|1|B|A|2198
5AKA|1|B|A|2199
5AKA|1|B|C|2200
*
5AKA|1|B|G|2223
5AKA|1|B|G|2224
5AKA|1|B|A|2225
5AKA|1|B|C|2226
5AKA|1|B|A|2227
5AKA|1|B|G|2228

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2

Chain H

50S RIBOSOMAL PROTEIN L9

Chain Z

50S RIBOSOMAL PROTEIN L31