J3_5AKA_010

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

5AKA|1|B|U|2833, 5AKA|1|B|A|2835, 5AKA|1|B|U|2884

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AKA_010 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.2383

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5AKA|1|B|G|2812
5AKA|1|B|A|2813
5AKA|1|B|A|2814
5AKA|1|B|C|2815
*
5AKA|1|B|G|2831
5AKA|1|B|U|2832
5AKA|1|B|U|2833
5AKA|1|B|G|2834
5AKA|1|B|A|2835
5AKA|1|B|U|2836
*
5AKA|1|B|A|2882
5AKA|1|B|A|2883
5AKA|1|B|U|2884
5AKA|1|B|G|2885
5AKA|1|B|A|2886
5AKA|1|B|A|2887
5AKA|1|B|C|2888

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3

Chain N

50S RIBOSOMAL PROTEIN L17