J3_5AKA_012
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5AKA|1|B|A|504, 5AKA|1|B|A|508
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AKA_012 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.154
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5AKA|1|B|G|30
5AKA|1|B|C|31
*
5AKA|1|B|G|474
5AKA|1|B|C|475
5AKA|1|B|G|476
5AKA|1|B|A|477
5AKA|1|B|A|478
5AKA|1|B|A|479
5AKA|1|B|A|480
5AKA|1|B|G|481
5AKA|1|B|A|482
5AKA|1|B|A|483
5AKA|1|B|C|484
*
5AKA|1|B|G|496
5AKA|1|B|A|497
5AKA|1|B|G|498
5AKA|1|B|U|499
5AKA|1|B|G|500
5AKA|1|B|A|501
5AKA|1|B|A|502
5AKA|1|B|A|503
5AKA|1|B|A|504
5AKA|1|B|A|505
5AKA|1|B|G|506
5AKA|1|B|A|507
5AKA|1|B|A|508
5AKA|1|B|C|509
5AKA|1|B|C|510
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain 5
- SIGNAL RECOGNITION PARTICLE PROTEIN
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain S
- 50S RIBOSOMAL PROTEIN L22
- Chain U
- 50S RIBOSOMAL PROTEIN L24
Coloring options: