J3_5AN9_001

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AN9_001 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2153

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5AN9|1|N|G|1465
5AN9|1|N|A|1466
5AN9|1|N|C|1467
*
5AN9|1|N|G|1491
5AN9|1|N|C|1492
5AN9|1|N|U|1493
5AN9|1|N|A|1494
5AN9|1|N|A|1495
5AN9|1|N|G|1496
5AN9|1|N|G|1497
*
5AN9|1|N|C|1512
5AN9|1|N|A|1513
5AN9|1|N|C|1514

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains

Chain C

60S ACIDIC RIBOSOMAL PROTEIN P0

Chain D

60S RIBOSOMAL PROTEIN L12