J3_5AN9_004

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

5AN9|1|N|C|3093, 5AN9|1|N|U|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AN9_004 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.0693

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

5AN9|1|N|G|2984
5AN9|1|N|U|2985
5AN9|1|N|C|2986
*
5AN9|1|N|G|3087
5AN9|1|N|C|3088
5AN9|1|N|C|3089
5AN9|1|N|U|3090
5AN9|1|N|A|3091
5AN9|1|N|U|3092
5AN9|1|N|C|3093
5AN9|1|N|G|3094
5AN9|1|N|A|3095
5AN9|1|N|U|3096
5AN9|1|N|C|3097
5AN9|1|N|C|3098
*
5AN9|1|N|G|3126
5AN9|1|N|G|3127
5AN9|1|N|U|3128
5AN9|1|N|G|3129
5AN9|1|N|U|3130
5AN9|1|N|C|3131

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains