3D structure

PDB id
5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.91 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5APN_007 not in the Motif Atlas
Homologous match to J3_5TBW_012
Geometric discrepancy: 0.1299
The information below is about J3_5TBW_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

5APN|1|5|A|2432
5APN|1|5|U|2433
5APN|1|5|U|2434
5APN|1|5|G|2435
*
5APN|1|5|C|2512
5APN|1|5|U|2513
5APN|1|5|U|2514
5APN|1|5|A|2515
5APN|1|5|U|2516
5APN|1|5|U|2517
*
5APN|1|5|A|2590
5APN|1|5|A|2591
5APN|1|5|G|2592
5APN|1|5|A|2593
5APN|1|5|C|2594
5APN|1|5|A|2595
5APN|1|5|U|2596
5APN|1|5|U|2597

Current chains

Chain 5
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain G
60S ribosomal protein L8-A
Chain N
60S ribosomal protein L15-A
Chain i
60S ribosomal protein L36-A

Coloring options:


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