J3_5APN_017
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 5APN|1|5|A|1065, 5APN|1|5|U|1094, 5APN|1|5|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APN_017 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.569
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APN|1|5|U|986
5APN|1|5|U|987
*
5APN|1|5|A|1062
5APN|1|5|G|1063
5APN|1|5|A|1064
5APN|1|5|A|1065
5APN|1|5|G|1066
*
5APN|1|5|C|1092
5APN|1|5|A|1093
5APN|1|5|U|1094
5APN|1|5|U|1095
5APN|1|5|U|1096
5APN|1|5|G|1097
5APN|1|5|A|1098
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- 60S ribosomal protein L29
Coloring options: