J3_5APN_026
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5APN|1|5|A|817, 5APN|1|5|G|924, 5APN|1|5|A|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APN_026 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.1364
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APN|1|5|U|814
5APN|1|5|G|815
5APN|1|5|A|816
5APN|1|5|A|817
5APN|1|5|C|818
5APN|1|5|U|819
5APN|1|5|A|820
*
5APN|1|5|U|905
5APN|1|5|A|906
5APN|1|5|G|907
*
5APN|1|5|C|923
5APN|1|5|G|924
5APN|1|5|A|925
5APN|1|5|A|926
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain C
- 60S ribosomal protein L4-A
- Chain j
- 60S ribosomal protein L37-A
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
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