J3_5APO_005
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 5APO|1|5|A|1482||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_005 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.1138
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
5APO|1|5|U|1479||||P_1
5APO|1|5|G|1480||||P_1
5APO|1|5|A|1481||||P_1
5APO|1|5|A|1482||||P_1
5APO|1|5|G|1483||||P_1
5APO|1|5|U|1484||||P_1
5APO|1|5|G|1485||||P_1
*
5APO|1|5|C|1857||||P_1
5APO|1|5|A|1858||||P_1
5APO|1|5|A|1859||||P_1
*
5APO|1|5|U|1871||||P_1
5APO|1|5|C|1872||||P_1
5APO|1|5|U|1873||||P_1
5APO|1|5|A|1874||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain g
- 60S ribosomal protein L34-A
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