J3_5APO_008
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 5APO|1|5|G|2549||||P_1, 5APO|1|5|U|2550||||P_1, 5APO|1|5|U|2551||||P_1, 5APO|1|5|A|2554||||P_1, 5APO|1|5|U|2558||||P_1, 5APO|1|5|U|2559||||P_1, 5APO|1|5|C|2560||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_008 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.148
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|A|2529||||P_1
5APO|1|5|G|2530||||P_1
5APO|1|5|C|2531||||P_1
5APO|1|5|U|2532||||P_1
*
5APO|1|5|A|2547||||P_1
5APO|1|5|C|2548||||P_1
5APO|1|5|G|2549||||P_1
5APO|1|5|U|2550||||P_1
5APO|1|5|U|2551||||P_1
5APO|1|5|C|2552||||P_1
5APO|1|5|U|2553||||P_1
5APO|1|5|A|2554||||P_1
5APO|1|5|G|2555||||P_1
5APO|1|5|C|2556||||P_1
5APO|1|5|A|2557||||P_1
5APO|1|5|U|2558||||P_1
5APO|1|5|U|2559||||P_1
5APO|1|5|C|2560||||P_1
5APO|1|5|A|2561||||P_1
5APO|1|5|A|2562||||P_1
5APO|1|5|G|2563||||P_1
*
5APO|1|5|U|2578||||P_1
5APO|1|5|G|2579||||P_1
5APO|1|5|A|2580||||P_1
5APO|1|5|U|2581||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
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