J3_5APO_009
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5APO|1|5|A|2703||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_009 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.087
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|C|2664||||P_1
5APO|1|5|U|2665||||P_1
5APO|1|5|C|2666||||P_1
*
5APO|1|5|G|2690||||P_1
5APO|1|5|A|2691||||P_1
5APO|1|5|A|2692||||P_1
*
5APO|1|5|U|2701||||P_1
5APO|1|5|A|2702||||P_1
5APO|1|5|A|2703||||P_1
5APO|1|5|A|2704||||P_1
5APO|1|5|A|2705||||P_1
5APO|1|5|G|2706||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
- Chain T
- 60S ribosomal protein L21-A
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