J3_5APO_010
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 5APO|1|5|A|2887||||P_1, 5APO|1|5|U|2888||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_010 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0929
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|U|2886||||P_1
5APO|1|5|A|2887||||P_1
5APO|1|5|U|2888||||P_1
5APO|1|5|C|2889||||P_1
*
5APO|1|5|G|2914||||P_1
5APO|1|5|U|2915||||P_1
5APO|1|5|U|2916||||P_1
*
5APO|1|5|A|2930||||P_1
5APO|1|5|C|2931||||P_1
5APO|1|5|U|2932||||P_1
5APO|1|5|A|2933||||P_1
5APO|1|5|A|2934||||P_1
5APO|1|5|U|2935||||P_1
5APO|1|5|A|2936||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
Coloring options: