J3_5APO_013
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 5APO|1|5|U|210||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_013 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1005
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75408.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|C|185||||P_1
5APO|1|5|U|186||||P_1
5APO|1|5|A|187||||P_1
5APO|1|5|U|188||||P_1
5APO|1|5|G|189||||P_1
*
5APO|1|5|C|205||||P_1
5APO|1|5|G|206||||P_1
5APO|1|5|U|207||||P_1
5APO|1|5|C|208||||P_1
5APO|1|5|A|209||||P_1
5APO|1|5|U|210||||P_1
5APO|1|5|A|211||||P_1
5APO|1|5|G|212||||P_1
5APO|1|5|A|213||||P_1
5APO|1|5|G|214||||P_1
*
5APO|1|5|C|226||||P_1
5APO|1|5|G|227||||P_1
5APO|1|5|U|228||||P_1
5APO|1|5|G|229||||P_1
5APO|1|5|U|230||||P_1
5APO|1|5|G|231||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
Coloring options: