J3_5APO_018
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 5APO|1|5|A|1065||||P_1, 5APO|1|5|U|1094||||P_1, 5APO|1|5|U|1095||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_018 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.5713
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|U|986||||P_1
5APO|1|5|U|987||||P_1
*
5APO|1|5|A|1062||||P_1
5APO|1|5|G|1063||||P_1
5APO|1|5|A|1064||||P_1
5APO|1|5|A|1065||||P_1
5APO|1|5|G|1066||||P_1
*
5APO|1|5|C|1092||||P_1
5APO|1|5|A|1093||||P_1
5APO|1|5|U|1094||||P_1
5APO|1|5|U|1095||||P_1
5APO|1|5|U|1096||||P_1
5APO|1|5|G|1097||||P_1
5APO|1|5|A|1098||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- 60S ribosomal protein L29
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