J3_5CZP_004

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5CZP|1|QA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5CZP_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0585

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

5CZP|1|QA|C|826
5CZP|1|QA|U|827
5CZP|1|QA|A|828
5CZP|1|QA|G|829
*
5CZP|1|QA|C|857
5CZP|1|QA|G|858
5CZP|1|QA|A|859
5CZP|1|QA|A|860
5CZP|1|QA|G|861
*
5CZP|1|QA|C|868
5CZP|1|QA|G|869
5CZP|1|QA|U|870
5CZP|1|QA|U|871
5CZP|1|QA|A|872
5CZP|1|QA|A|873
5CZP|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8