J3_5D8B_005

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5D8B_005 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2219

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5D8B|1|UC|C|990
5D8B|1|UC|U|991
5D8B|1|UC|U|992
5D8B|1|UC|G|993
*
5D8B|1|UC|C|1045
5D8B|1|UC|A|1046
5D8B|1|UC|G|1047
*
5D8B|1|UC|C|1210
5D8B|1|UC|U|1211
5D8B|1|UC|U|1212
5D8B|1|UC|A|1213
5D8B|1|UC|C|1214
5D8B|1|UC|G|1215

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain OA

30S ribosomal protein S14