J3_5D8B_014

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5D8B_014 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.1016

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5D8B|1|VC|U|2091
5D8B|1|VC|U|2092
5D8B|1|VC|G|2093
*
5D8B|1|VC|C|2196
5D8B|1|VC|U|2197
5D8B|1|VC|A|2198
5D8B|1|VC|A|2199
5D8B|1|VC|C|2205
*
5D8B|1|VC|G|2219
5D8B|1|VC|G|2224
5D8B|1|VC|A|2225
5D8B|1|VC|C|2226
5D8B|1|VC|A|2227
5D8B|1|VC|G|2228

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain V

50S ribosomal protein L28