J3_5D8B_023
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_023 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1289
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5D8B|1|YC|C|1063
5D8B|1|YC|G|1064
5D8B|1|YC|U|1065
5D8B|1|YC|C|1066
5D8B|1|YC|A|1067
5D8B|1|YC|G|1068
*
5D8B|1|YC|C|1107
5D8B|1|YC|G|1108
5D8B|1|YC|C|1109
5D8B|1|YC|A|1110
5D8B|1|YC|A|1111
5D8B|1|YC|C|1112
5D8B|1|YC|C|1113
*
5D8B|1|YC|G|1187
5D8B|1|YC|A|1188
5D8B|1|YC|C|1189
5D8B|1|YC|G|1190
5D8B|1|YC|A|1191
5D8B|1|YC|C|1192
5D8B|1|YC|G|1193
Current chains
- Chain YC
- 16S ribosomal RNA
Nearby chains
- Chain BC
- 30S ribosomal protein S5
- Chain DC
- 30S ribosomal protein S7
- Chain FC
- 30S ribosomal protein S9
- Chain GC
- 30S ribosomal protein S10
- Chain KC
- 30S ribosomal protein S14
- Chain YB
- 30S ribosomal protein S2
- Chain ZB
- 30S ribosomal protein S3
Coloring options: