J3_5D8B_054
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 5D8B|1|WC|A|13, 5D8B|1|WC|U|14, 5D8B|1|WC|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_054 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.2205
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5D8B|1|WC|C|11
5D8B|1|WC|C|12
5D8B|1|WC|A|13
5D8B|1|WC|U|14
5D8B|1|WC|A|15
5D8B|1|WC|G|16
*
5D8B|1|WC|C|68
5D8B|1|WC|G|69
*
5D8B|1|WC|U|107
5D8B|1|WC|C|108
5D8B|1|WC|G|109
Current chains
- Chain WC
- 5S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L25
- Chain U
- 50S ribosomal protein L27
- Chain VC
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: