J3_5D8B_072

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5D8B_072 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1023

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5D8B|1|ZC|G|1424
5D8B|1|ZC|G|1425
5D8B|1|ZC|G|1426
5D8B|1|ZC|A|1427
5D8B|1|ZC|C|1428
5D8B|1|ZC|G|1429
*
5D8B|1|ZC|C|1564
5D8B|1|ZC|C|1565
*
5D8B|1|ZC|G|1568
5D8B|1|ZC|A|1569
5D8B|1|ZC|A|1570
5D8B|1|ZC|A|1571
5D8B|1|ZC|A|1572
5D8B|1|ZC|G|1573
5D8B|1|ZC|C|1574

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain WA

50S ribosomal protein L2