J3_5DAR_002

3D structure

PDB id

5DAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DAR_002 not in the Motif Atlas

Homologous match to J3_5D8H_001

Geometric discrepancy: 0.0654

The information below is about J3_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

5DAR|1|D|G|1165
5DAR|1|D|G|1166
5DAR|1|D|A|1167
*
5DAR|1|D|U|1191
5DAR|1|D|U|1192
5DAR|1|D|U|1193
5DAR|1|D|A|1194
5DAR|1|D|A|1195
5DAR|1|D|A|1196
5DAR|1|D|G|1197
*
5DAR|1|D|C|1212
5DAR|1|D|A|1213
5DAR|1|D|C|1214

Current chains

Chain D

74 nt fragment of 23S rRNA

Nearby chains

Chain E

50S ribosomal protein L10

Chain F

50S ribosomal protein L11