J3_5DAT_004
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5DAT|1|1|A|817, 5DAT|1|1|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DAT_004 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.0479
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5DAT|1|1|U|814
5DAT|1|1|G|815
5DAT|1|1|A|816
5DAT|1|1|A|817
5DAT|1|1|C|818
5DAT|1|1|U|819
5DAT|1|1|A|820
*
5DAT|1|1|U|905
5DAT|1|1|A|906
5DAT|1|1|G|907
*
5DAT|1|1|C|923
5DAT|1|1|G|924
5DAT|1|1|A|925
5DAT|1|1|A|926
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
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