J3_5DFE_059

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5DFE|1|QA|U|1212, 5DFE|1|QA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DFE_059 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1335

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5DFE|1|QA|C|990
5DFE|1|QA|U|991
5DFE|1|QA|U|992
5DFE|1|QA|G|993
5DFE|1|QA|A|994
5DFE|1|QA|C|995
5DFE|1|QA|A|996
5DFE|1|QA|U|997
*
5DFE|1|QA|A|1044
5DFE|1|QA|C|1045
5DFE|1|QA|A|1046
5DFE|1|QA|G|1047
*
5DFE|1|QA|C|1210
5DFE|1|QA|U|1211
5DFE|1|QA|U|1212
5DFE|1|QA|A|1213
5DFE|1|QA|C|1214
5DFE|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain QY

Peptide chain release factor 2

Chain YA

Large subunit ribosomal RNA; LSU rRNA