J3_5DFE_061
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 5DFE|1|RA|U|504, 5DFE|1|RA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DFE_061 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0482
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5DFE|1|RA|G|30
5DFE|1|RA|C|31
*
5DFE|1|RA|G|474
5DFE|1|RA|U|475
5DFE|1|RA|G|476
5DFE|1|RA|A|477
5DFE|1|RA|A|478
5DFE|1|RA|A|479
5DFE|1|RA|A|480
5DFE|1|RA|G|481
5DFE|1|RA|A|482
5DFE|1|RA|A|483
5DFE|1|RA|C|484
*
5DFE|1|RA|G|496
5DFE|1|RA|A|497
5DFE|1|RA|G|498
5DFE|1|RA|U|499
5DFE|1|RA|G|500
5DFE|1|RA|A|501
5DFE|1|RA|A|502
5DFE|1|RA|A|503
5DFE|1|RA|U|504
5DFE|1|RA|A|505
5DFE|1|RA|G|506
5DFE|1|RA|A|507
5DFE|1|RA|G|508
5DFE|1|RA|C|509
5DFE|1|RA|C|510
Current chains
- Chain RA
- T23S rRNA
Nearby chains
- Chain RU
- 50S ribosomal protein L20
- Chain RW
- 50S ribosomal protein L22
- Chain RY
- 50S ribosomal protein L24
Coloring options: