J3_5DGF_033
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5DGF|1|5|A|817, 5DGF|1|5|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGF_033 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.0623
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5DGF|1|5|U|814
5DGF|1|5|G|815
5DGF|1|5|A|816
5DGF|1|5|A|817
5DGF|1|5|C|818
5DGF|1|5|U|819
5DGF|1|5|A|820
*
5DGF|1|5|U|905
5DGF|1|5|A|906
5DGF|1|5|G|907
*
5DGF|1|5|C|923
5DGF|1|5|G|924
5DGF|1|5|A|925
5DGF|1|5|A|926
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
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