J3_5DGF_051
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGF_051 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.0727
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5DGF|1|6|C|1161
5DGF|1|6|C|1162
5DGF|1|6|A|1163
5DGF|1|6|G|1164
*
5DGF|1|6|C|1581
5DGF|1|6|U|1582
5DGF|1|6|A|1583
5DGF|1|6|G|1584
5DGF|1|6|U|1585
5DGF|1|6|A|1586
5DGF|1|6|A|1587
*
5DGF|1|6|U|1609
5DGF|1|6|G|1610
5DGF|1|6|A|1611
5DGF|1|6|U|1612
5DGF|1|6|U|1613
5DGF|1|6|A|1614
5DGF|1|6|C|1615
5DGF|1|6|G|1616
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain d8
- 40S ribosomal protein S28-A
- Chain s5
- 40S ribosomal protein S5
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